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WWE domain of human HUWE1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UJR FFAS model based on PDB entry 1ujr
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 Molecular Dimensions Morpheus HT condition D3
Crystal Properties Matthews coefficient Solvent content 2.64 53.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.134 α = 90 b = 60.134 β = 90 c = 53.288 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN A200 2018-08-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 30.07 100 0.093 0.098 0.03 0.999 22.4 10.4 7843
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 100 1.073 1.13 0.352 0.789 10.3 581
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT FFAS model based on PDB entry 1ujr 2 30.09 7436 387 99.92 0.1814 0.1798 0.2118 0.1863 28.326
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.21 -0.11 -0.21 0.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.664 r_dihedral_angle_4_deg 16.387 r_dihedral_angle_3_deg 12.494 r_dihedral_angle_1_deg 6.618 r_mcangle_it 4.076 r_mcbond_it 2.873 r_mcbond_other 2.868 r_angle_refined_deg 1.715 r_angle_other_deg 1.455 r_chiral_restr 0.079
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.664 r_dihedral_angle_4_deg 16.387 r_dihedral_angle_3_deg 12.494 r_dihedral_angle_1_deg 6.618 r_mcangle_it 4.076 r_mcbond_it 2.873 r_mcbond_other 2.868 r_angle_refined_deg 1.715 r_angle_other_deg 1.455 r_chiral_restr 0.079 r_bond_refined_d 0.013 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 545 Nucleic Acid Atoms Solvent Atoms 19 Heterogen Atoms 22
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction PHASER phasing