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Zn- Carbonic Anhydrase II pH 11.0 0 atm CO2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5YUK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 11 293 1.3 M sodium citrate, 50 mM Tris-HCl
Crystal Properties Matthews coefficient Solvent content 2.08 40.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.28 α = 90 b = 41.263 β = 104.189 c = 72.068 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2019-12-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.9793 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 30 98 0.085 0.091 0.034 0.991 25.2 7.4 73914
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.22 96 0.177 0.19 0.069 0.982 12.7 7.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5YUK 1.2 30 73898 3792 97.943 0.112 0.1106 0.1106 0.1308 0.1309 10.945
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.141 0.014 0.066 0.06
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 38.035 r_dihedral_angle_2_deg 34.648 r_dihedral_angle_4_deg 25.2 r_sphericity_bonded 13.504 r_dihedral_angle_3_deg 11.801 r_lrange_it 8.245 r_lrange_other 8.221 r_dihedral_angle_1_deg 6.717 r_rigid_bond_restr 6.224 r_scangle_it 3.841
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 38.035 r_dihedral_angle_2_deg 34.648 r_dihedral_angle_4_deg 25.2 r_sphericity_bonded 13.504 r_dihedral_angle_3_deg 11.801 r_lrange_it 8.245 r_lrange_other 8.221 r_dihedral_angle_1_deg 6.717 r_rigid_bond_restr 6.224 r_scangle_it 3.841 r_scangle_other 3.84 r_scbond_it 3.541 r_scbond_other 3.541 r_angle_refined_deg 2.506 r_mcangle_other 2.229 r_mcangle_it 2.194 r_mcbond_it 1.675 r_mcbond_other 1.642 r_angle_other_deg 1.316 r_nbd_other 0.347 r_symmetry_nbd_refined 0.314 r_nbd_refined 0.284 r_symmetry_xyhbond_nbd_refined 0.223 r_chiral_restr 0.215 r_symmetry_nbd_other 0.185 r_nbtor_refined 0.185 r_xyhbond_nbd_refined 0.151 r_symmetry_nbtor_other 0.087 r_metal_ion_refined 0.075 r_bond_refined_d 0.029 r_gen_planes_refined 0.015 r_bond_other_d 0.004 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2049 Nucleic Acid Atoms Solvent Atoms 264 Heterogen Atoms 7
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing