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Oxygen-exposed reduced terminal oxygenase in carbazole 1,9a-dioxygenase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1WW9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 0.05 M MgCl2, 0.1 M HEPES pH 7.5, 30% (v/v) PEG MME 550
Crystal Properties Matthews coefficient Solvent content 2.16 43.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.738 α = 90 b = 91.738 β = 90 c = 240.024 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 315 2017-11-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-5A 1.0 Photon Factory BL-5A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 80 100 0.096 39.5 22.7 61883
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.19 0.722
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1WW9 2.15 79.45 57710 3074 98.28 0.1556 0.15269 0.1616 0.20898 0.2137 RANDOM 28.509
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.11 -0.05 -0.11 0.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.477 r_dihedral_angle_4_deg 15.541 r_dihedral_angle_3_deg 15.129 r_dihedral_angle_1_deg 6.808 r_long_range_B_refined 6.252 r_long_range_B_other 6.252 r_scangle_other 4.519 r_mcangle_it 3.702 r_mcangle_other 3.702 r_scbond_it 2.895
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.477 r_dihedral_angle_4_deg 15.541 r_dihedral_angle_3_deg 15.129 r_dihedral_angle_1_deg 6.808 r_long_range_B_refined 6.252 r_long_range_B_other 6.252 r_scangle_other 4.519 r_mcangle_it 3.702 r_mcangle_other 3.702 r_scbond_it 2.895 r_scbond_other 2.895 r_mcbond_it 2.413 r_mcbond_other 2.412 r_angle_refined_deg 1.86 r_angle_other_deg 1.064 r_chiral_restr 0.111 r_bond_refined_d 0.017 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9243 Nucleic Acid Atoms Solvent Atoms 448 Heterogen Atoms 158
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing