X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP293Bis-Tris, PEG 3350
Crystal Properties
Matthews coefficientSolvent content
2.754.46

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 50.786α = 90
b = 50.786β = 90
c = 168.376γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2018-07-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 17-ID0.979APS17-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9937.6993.10.0670.0710.0240.99720.415.114995
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.992.090.8820.940.3230.8962.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1U8U1.9937.691417871492.880.228430.227080.25629RANDOM65.871
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.38-0.380.76
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.549
r_dihedral_angle_4_deg16.607
r_dihedral_angle_3_deg14.799
r_dihedral_angle_1_deg5.363
r_long_range_B_refined3.7
r_long_range_B_other3.692
r_scangle_other2.271
r_mcangle_it2.06
r_mcangle_other2.059
r_scbond_it1.41
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.549
r_dihedral_angle_4_deg16.607
r_dihedral_angle_3_deg14.799
r_dihedral_angle_1_deg5.363
r_long_range_B_refined3.7
r_long_range_B_other3.692
r_scangle_other2.271
r_mcangle_it2.06
r_mcangle_other2.059
r_scbond_it1.41
r_scbond_other1.41
r_mcbond_it1.309
r_mcbond_other1.308
r_angle_refined_deg1.285
r_angle_other_deg1.098
r_chiral_restr0.081
r_bond_refined_d0.009
r_gen_planes_refined0.004
r_gen_planes_other0.003
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1416
Nucleic Acid Atoms
Solvent Atoms21
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
xia2data reduction
xia2data scaling
PHASERphasing