6KN4
HUMAN PARALLEL STRANDED 7-MER G-QUADRUPLEX COMPLEXED WITH 2 ADRIAMYCIN (DM2) MOLECULES
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 5 | 2D 1H-1H NOESY | 1.16 mM DNA (5'-D(*TP*TP*AP*GP*GP*GP*T)-3') | 90% H2O/10% D2O | 100 mM | 7.4 | 1 atm | 298 | Bruker AVANCE II 500 |
| 6 | 1D | 1.16 mM DNA (5'-D(*TP*TP*AP*GP*GP*GP*T)-3') | 90% H2O/10% D2O | 100 mM | 7.4 | 1 atm | 298 | Bruker AVANCE II 500 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE II | 500 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | Amber | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 16 |
| Conformers Submitted Total Number | 8 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | Amber | 16 | CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, DUKE, LUO, ... AND KOLLMAN |
| 2 | structure solution | TopSpin | ||
