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ZHD/H242A complex with bZOL
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5C8Z
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 ammonium phosphate, imidazole, potassium chloride
Crystal Properties Matthews coefficient Solvent content 3.14 60.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.61 α = 90 b = 91.68 β = 90 c = 113.64 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2017-04-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U1 0.97916 SSRF BL17U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.08 113.64 99.2 0.103 0.063 0.997 12.2 6.9 47254
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.08 2.13 0.627 0.37 0.866
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5c8z 2.08 35 44837 2354 99.01 0.1913 0.18908 0.1983 0.23508 0.2458 RANDOM 34.81
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.24 -0.42 2.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.828 r_dihedral_angle_4_deg 15.272 r_dihedral_angle_3_deg 12.827 r_dihedral_angle_1_deg 6.938 r_long_range_B_refined 6.733 r_long_range_B_other 6.725 r_scangle_other 5.321 r_mcangle_other 3.758 r_mcangle_it 3.756 r_scbond_it 3.631
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.828 r_dihedral_angle_4_deg 15.272 r_dihedral_angle_3_deg 12.827 r_dihedral_angle_1_deg 6.938 r_long_range_B_refined 6.733 r_long_range_B_other 6.725 r_scangle_other 5.321 r_mcangle_other 3.758 r_mcangle_it 3.756 r_scbond_it 3.631 r_scbond_other 3.63 r_mcbond_it 2.728 r_mcbond_other 2.716 r_angle_refined_deg 1.489 r_angle_other_deg 1.437 r_chiral_restr 0.077 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4086 Nucleic Acid Atoms Solvent Atoms 215 Heterogen Atoms 58
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing