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Ligand complex structure of GH10 family xylanase XynAF1, soaking for 40 minutes
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1M MES pH6.5, 25%(w/v) PEG 6000
Crystal Properties Matthews coefficient Solvent content 2.13 42.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.348 α = 73.88 b = 57.4 β = 80.47 c = 64.924 γ = 68.59
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2018-03-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 0.979 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.18 62.21 91.49 0.054 24.5 3.6 171991 11.45
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.18 1.22 89.43 0.393 3.5 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.18 62.21 163429 8599 91.4 0.133 0.1321 0.1331 0.151 0.1519 RANDOM 13.285
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.49 -0.1 0.32 -0.17 0.25 -0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.997 r_dihedral_angle_3_deg 11.635 r_dihedral_angle_1_deg 7.07 r_angle_refined_deg 2.523 r_dihedral_angle_4_deg 2.323 r_angle_other_deg 1.235 r_chiral_restr 0.198 r_bond_refined_d 0.029 r_gen_planes_refined 0.014 r_bond_other_d 0.003
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.997 r_dihedral_angle_3_deg 11.635 r_dihedral_angle_1_deg 7.07 r_angle_refined_deg 2.523 r_dihedral_angle_4_deg 2.323 r_angle_other_deg 1.235 r_chiral_restr 0.198 r_bond_refined_d 0.029 r_gen_planes_refined 0.014 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4870 Nucleic Acid Atoms Solvent Atoms 633 Heterogen Atoms 130
Software Software Software Name Purpose HKL-2000 data reduction HKL-2000 data scaling REFMAC refinement PDB_EXTRACT data extraction PHASER phasing