6IWS | pdb_00006iws

Solution structure of the J-domain of Tid1, a Mitochondrial Hsp40/DnaJ Protein

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	3D HNCACB	1 mM [U-13C; U-15N] J_domain, 300 mM sodium chloride, 1 mM Dithiothreitol, 20 mM TRIS, 10 % v/v D2O	90% H2O/10% D2O	300 mM	7.0	1 atm	298	Bruker Bruker Biospin Avance 800 spectrometer 800
2	3D CBCA(CO)NH	1 mM [U-13C; U-15N] J_domain, 300 mM sodium chloride, 1 mM Dithiothreitol, 20 mM TRIS, 10 % v/v D2O	90% H2O/10% D2O	300 mM	7.0	1 atm	298	Bruker Bruker Biospin Avance 800 spectrometer 800
3	3D HNCO	1 mM [U-13C; U-15N] J_domain, 300 mM sodium chloride, 1 mM Dithiothreitol, 20 mM TRIS, 10 % v/v D2O	90% H2O/10% D2O	300 mM	7.0	1 atm	298	Bruker Bruker Biospin Avance 800 spectrometer 800
4	3D HNCACO	1 mM [U-13C; U-15N] J_domain, 300 mM sodium chloride, 1 mM Dithiothreitol, 20 mM TRIS, 10 % v/v D2O	90% H2O/10% D2O	300 mM	7.0	1 atm	298	Bruker Bruker Biospin Avance 800 spectrometer 800
5	3D 1H-15N NOESY	1 mM [U-13C; U-15N] J_domain, 300 mM sodium chloride, 1 mM Dithiothreitol, 20 mM TRIS, 10 % v/v D2O	90% H2O/10% D2O	300 mM	7.0	1 atm	298	Bruker Bruker Biospin Avance 800 spectrometer 800
6	3D 1H-13C NOESY	1 mM [U-13C; U-15N] J_domain, 300 mM sodium chloride, 1 mM Dithiothreitol, 20 mM TRIS, 10 % v/v D2O	90% H2O/10% D2O	300 mM	7.0	1 atm	298	Bruker Bruker Biospin Avance 800 spectrometer 800
7	3D HCCH-TOCSY	1 mM [U-13C; U-15N] J_domain, 300 mM sodium chloride, 1 mM Dithiothreitol, 20 mM TRIS, 10 % v/v D2O	90% H2O/10% D2O	300 mM	7.0	1 atm	298	Bruker Bruker Biospin Avance 900 spectrometer 900
10	3D HCCH-COSY	1 mM [U-13C; U-15N] J_domain, 300 mM sodium chloride, 1 mM Dithiothreitol, 20 mM TRIS, 10 % v/v D2O	90% H2O/10% D2O	300 mM	7.0	1 atm	298	Bruker Bruker Biospin Avance 900 spectrometer 900

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	Bruker Biospin Avance 900 spectrometer	900
2	Bruker	Bruker Biospin Avance 800 spectrometer	800

NMR Refinement
Method	Details	Software
simulated annealing		CYANA

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	20
Conformers Submitted Total Number	20
Representative Model	1 (target function)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
2	structure calculation	CYANA		Guntert, Mumenthaler and Wuthrich
3	chemical shift assignment	NMRView		Johnson, One Moon Scientific
4	peak picking	NMRView		Johnson, One Moon Scientific
5	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.