Experiment: 6ITH

Structure of the transmembrane domain of syndecan 2 in micelles

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	NOESY	20 mM sodium phosphate, 5 % w/v DPC, 1 mM DTT, 0.5 mM [U-100% 13C; U-100% 15N] SCN2	90% H2O/10% D2O	20 mM	6.5	AMBIENT atm	313	Bruker AVANCE 700
2	3D HNCACB	20 mM sodium phosphate, 5 % w/v DPC, 1 mM DTT, 0.5 mM [U-100% 13C; U-100% 15N] SCN2	90% H2O/10% D2O	20 mM	6.5	AMBIENT atm	313	Bruker AVANCE 700
3	2D 1H-15N HSQC	20 mM sodium phosphate, 5 % w/v DPC, 1 mM DTT, 0.5 mM [U-100% 13C; U-100% 15N] SCN2	90% H2O/10% D2O	20 mM	6.5	AMBIENT atm	313	Bruker AVANCE 700
4	2D 1H-15N HSQC	20 mM sodium phosphate, 5 % w/v DPC, 1 mM DTT, 0.5 mM [U-100% 13C; U-100% 15N] SCN2	90% H2O/10% D2O	20 mM	6.5	AMBIENT atm	313	Bruker AVANCE 600
5	3D HNCO	20 mM sodium phosphate, 5 % w/v DPC, 1 mM DTT, 0.5 mM [U-100% 13C; U-100% 15N] SCN2	90% H2O/10% D2O	20 mM	6.5	AMBIENT atm	313	Bruker AVANCE 700
6	HNCOCACB	20 mM sodium phosphate, 5 % w/v DPC, 1 mM DTT, 0.5 mM [U-100% 13C; U-100% 15N] SCN2	90% H2O/10% D2O	20 mM	6.5	AMBIENT atm	313	Bruker AVANCE 700
7	3D HNCA	20 mM sodium phosphate, 5 % w/v DPC, 1 mM DTT, 0.5 mM [U-100% 13C; U-100% 15N] SCN2	90% H2O/10% D2O	20 mM	6.5	AMBIENT atm	313	Bruker AVANCE 700
8	3D HBHA(CO)NH	20 mM sodium phosphate, 5 % w/v DPC, 1 mM DTT, 0.5 mM [U-100% 13C; U-100% 15N] SCN2	90% H2O/10% D2O	20 mM	6.5	AMBIENT atm	313	Bruker AVANCE 700
9	2D 1H-15N HSQC	20 mM sodium phosphate, 5 % DPC, 1 mM DTT, 0.5 mM [U-99% 15N] SCN2	100% D2O	20 mM	6.5	AMBIENT atm	313	Bruker AVANCE 600

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	600
2	Bruker	AVANCE	700

NMR Refinement
Method	Details	Software
torsion angle dynamics		CYANA

NMR Ensemble Information
Conformer Selection Criteria	structures with the least restraint violations
Conformers Calculated Total Number	100
Conformers Submitted Total Number	15
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	structure calculation	CYANA	3.97	Guntert, Mumenthaler and Wuthrich
2	chemical shift assignment	NMRView	3.97	Johnson, One Moon Scientific
3	collection	AUREMOL		Bruker Biospin
4	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax