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Two minutes iron loaded Rana Catesbeiana H' ferritin variant H54N
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4LQH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 281 1.6-2.0 M MgCl2 and 0.1 M bicine pH 9.0
Crystal Properties Matthews coefficient Solvent content 3.18 61.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 183.83 α = 90 b = 183.83 β = 90 c = 183.83 γ = 90
Symmetry Space Group F 4 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2012-10-08 M SINGLE WAVELENGTH 2 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2012-10-29 M SINGLE WAVELENGTH 3 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2012-10-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.95372 ESRF BM14 2 SYNCHROTRON ELETTRA BEAMLINE 5.2R 1.73893 ELETTRA 5.2R 3 SYNCHROTRON ELETTRA BEAMLINE 5.2R 1.76116 ELETTRA 5.2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 22.46 97.2 0.058 0.063 0.018 0.999 19.2 10.8 80466 2 5.67
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.26 92.9 0.366 0.452 0.188 0.86 4 5.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4LQH 1.2 22.3 76291 4142 97 0.12158 0.12074 0.1211 0.13706 0.1366 RANDOM 9.779
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.678 r_dihedral_angle_4_deg 18.982 r_dihedral_angle_3_deg 12.353 r_dihedral_angle_1_deg 4.955 r_long_range_B_refined 2.744 r_long_range_B_other 1.703 r_angle_other_deg 1.642 r_angle_refined_deg 1.519 r_scangle_other 1.506 r_rigid_bond_restr 1.464
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.678 r_dihedral_angle_4_deg 18.982 r_dihedral_angle_3_deg 12.353 r_dihedral_angle_1_deg 4.955 r_long_range_B_refined 2.744 r_long_range_B_other 1.703 r_angle_other_deg 1.642 r_angle_refined_deg 1.519 r_scangle_other 1.506 r_rigid_bond_restr 1.464 r_scbond_it 1.074 r_scbond_other 1.074 r_mcangle_it 1.042 r_mcangle_other 1.042 r_mcbond_it 0.792 r_mcbond_other 0.787 r_chiral_restr 0.085 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1418 Nucleic Acid Atoms Solvent Atoms 367 Heterogen Atoms 22
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction XDS data reduction SCALA data scaling MOLREP phasing