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Crystal structure of CLK1 in complexed with furo[3,2-b]pyridine compound 12h
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6G33
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 277 20% PEG 6000, 0.1M bicine pH 9.0
Crystal Properties Matthews coefficient Solvent content 2.54 51.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.96 α = 90 b = 64.01 β = 122.71 c = 81.16 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2016-02-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.99000 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 49.32 99.4 0.069 8.5 2.9 51989
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 99.5 0.508 2.2 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6G33 1.6 49.32 49432 2557 99.34 0.16551 0.16399 0.19557 0.2032 RANDOM 23.596
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.53 -0.06 -0.06 -0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.077 r_dihedral_angle_4_deg 23.427 r_dihedral_angle_3_deg 12.337 r_long_range_B_refined 6.978 r_long_range_B_other 6.978 r_dihedral_angle_1_deg 5.903 r_scangle_other 2.454 r_mcangle_it 2.076 r_mcangle_other 2.075 r_angle_refined_deg 1.623
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.077 r_dihedral_angle_4_deg 23.427 r_dihedral_angle_3_deg 12.337 r_long_range_B_refined 6.978 r_long_range_B_other 6.978 r_dihedral_angle_1_deg 5.903 r_scangle_other 2.454 r_mcangle_it 2.076 r_mcangle_other 2.075 r_angle_refined_deg 1.623 r_scbond_it 1.502 r_scbond_other 1.502 r_mcbond_it 1.192 r_mcbond_other 1.191 r_angle_other_deg 0.94 r_chiral_restr 0.108 r_bond_refined_d 0.016 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2686 Nucleic Acid Atoms Solvent Atoms 369 Heterogen Atoms 75
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing