Experiment: 6HX3

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	6.5	291	0.8 M Ammonium sulphate, 0.05 M MES monophydrate pH 6.5, 5 % 1,4 Dioxane 10 mM Tris pH6.8, 100 mM KCl, 3 mM DTT

Crystal Properties
Matthews coefficient	Solvent content
2.58	52.44

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 177.76	α = 90
b = 177.76	β = 90
c = 115.39	γ = 120

Symmetry
Space Group	H 3

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 2M-F		2014-07-21	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X06SA	1	SLS	X06SA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.84	92.33	100	0.209	0.235	0.106	0.997	7.7	9.6		118755			26.64

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.84	1.87	100		3.698	4.173	1.913	0.129	0.6	9.5

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	5K3V CHAINSAW model	2	92.33	87297	4554	99.99	0.2245	0.2231	0.2495	RANDOM	32.899

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.66	-0.83		-1.66		5.38

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	29.065
r_dihedral_angle_4_deg	16.709
r_dihedral_angle_3_deg	13.862
r_dihedral_angle_1_deg	4.679
r_angle_refined_deg	0.774
r_angle_other_deg	0.512
r_chiral_restr	0.043
r_bond_refined_d	0.004
r_gen_planes_refined	0.003
r_bond_other_d

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	29.065
r_dihedral_angle_4_deg	16.709
r_dihedral_angle_3_deg	13.862
r_dihedral_angle_1_deg	4.679
r_angle_refined_deg	0.774
r_angle_other_deg	0.512
r_chiral_restr	0.043
r_bond_refined_d	0.004
r_gen_planes_refined	0.003
r_bond_other_d
r_gen_planes_other

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	14656
Nucleic Acid Atoms
Solvent Atoms	238
Heterogen Atoms	60

Software

Software
Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
MOSFLM	data reduction
Aimless	data scaling
PHASER	phasing

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.