6HCP

Crystal structure of BauA, the Ferric preacinetobactin receptor from Acinetobacter baumannii


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION294PEG 8000 Hepes KCl ethylene glycol

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 180.2α = 90
b = 219.52β = 99.21
c = 101.43γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2015-04-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I020.97949DiamondI02

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8357.2499.70.04917.13.8339550
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.831.8899.60.6652.23.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.8357.243224091714099.70.156590.155520.17662RANDOM34.15
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.620.74-0.880.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.46
r_dihedral_angle_4_deg22.521
r_dihedral_angle_3_deg11.447
r_long_range_B_refined8.633
r_long_range_B_other8.448
r_scangle_other7.4
r_dihedral_angle_1_deg7.045
r_scbond_it5.62
r_scbond_other5.615
r_mcangle_it3.896
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.46
r_dihedral_angle_4_deg22.521
r_dihedral_angle_3_deg11.447
r_long_range_B_refined8.633
r_long_range_B_other8.448
r_scangle_other7.4
r_dihedral_angle_1_deg7.045
r_scbond_it5.62
r_scbond_other5.615
r_mcangle_it3.896
r_mcangle_other3.896
r_mcbond_it3.31
r_mcbond_other3.306
r_angle_refined_deg1.16
r_angle_other_deg0.917
r_chiral_restr0.061
r_gen_planes_refined0.014
r_bond_refined_d0.008
r_gen_planes_other0.002
r_bond_other_d
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms15402
Nucleic Acid Atoms
Solvent Atoms1995
Heterogen Atoms733

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing