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MamM CTD H264E - Cadmium form 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3W5X
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.2M (NH4)2SO4,
0.1M BIS-TRIS pH=5.5,
25% PEG 3350,
1.7mM CdCl2
Crystal Properties Matthews coefficient Solvent content 1.95 37.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.997 α = 90 b = 94.499 β = 90 c = 53.214 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-09-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.976247 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 47.25 99.9 0.037 0.999 22.5 7.1 20888
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.37 99.1 0.575 1.3 7.1 1016
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3W5X 1.35 47.25 19811 1059 99.8 0.16761 0.16631 0.1645 0.19225 0.1939 RANDOM 26.71
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.19 -0.56 -0.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.407 r_sphericity_free 30.322 r_dihedral_angle_4_deg 19.387 r_dihedral_angle_3_deg 13.256 r_sphericity_bonded 10.236 r_dihedral_angle_1_deg 5.97 r_long_range_B_refined 3.436 r_long_range_B_other 3.434 r_scangle_other 3.117 r_rigid_bond_restr 2.869
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.407 r_sphericity_free 30.322 r_dihedral_angle_4_deg 19.387 r_dihedral_angle_3_deg 13.256 r_sphericity_bonded 10.236 r_dihedral_angle_1_deg 5.97 r_long_range_B_refined 3.436 r_long_range_B_other 3.434 r_scangle_other 3.117 r_rigid_bond_restr 2.869 r_scbond_it 2.742 r_scbond_other 2.693 r_mcangle_it 2.055 r_mcangle_other 2.055 r_mcbond_it 1.625 r_angle_refined_deg 1.624 r_mcbond_other 1.603 r_angle_other_deg 0.953 r_chiral_restr 0.096 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 611 Nucleic Acid Atoms Solvent Atoms 53 Heterogen Atoms 17
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing