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MamM CTD H264E - Zinc form 2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3W5X
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.2M Ammonium sulfate,
0.1M BIS-TRIS pH=6.5,
25% PEG 3350,
1.7 mM ZnCl2
Crystal Properties Matthews coefficient Solvent content 1.64 24.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.049 α = 90 b = 55.648 β = 92.14 c = 63.767 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2017-05-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.97624 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 47.03 99.8 0.083 0.087 0.025 0.997 23.2 11.8 20715
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 96.3 0.993 13.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3W5X 2 47.03 19808 906 98.72 0.17238 0.17031 0.22053 0.2634 RANDOM 30.206
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.76 -0.04 -1.04 1.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.881 r_dihedral_angle_4_deg 20.321 r_dihedral_angle_3_deg 17.226 r_long_range_B_other 7.489 r_long_range_B_refined 7.488 r_dihedral_angle_1_deg 6.81 r_scangle_other 5.44 r_scbond_it 3.979 r_scbond_other 3.976 r_mcangle_it 2.985
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.881 r_dihedral_angle_4_deg 20.321 r_dihedral_angle_3_deg 17.226 r_long_range_B_other 7.489 r_long_range_B_refined 7.488 r_dihedral_angle_1_deg 6.81 r_scangle_other 5.44 r_scbond_it 3.979 r_scbond_other 3.976 r_mcangle_it 2.985 r_mcangle_other 2.984 r_mcbond_it 2.192 r_mcbond_other 2.192 r_angle_refined_deg 1.467 r_angle_other_deg 1.016 r_chiral_restr 0.084 r_bond_refined_d 0.014 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2086 Nucleic Acid Atoms Solvent Atoms 159 Heterogen Atoms 25
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing