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Tubulin-CopN-alphaRep complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5EYP 5eyp, 4p40, 3ltm experimental model PDB 4P40 5eyp, 4p40, 3ltm experimental model PDB 3LTM 5eyp, 4p40, 3ltm
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 polyethylene glycol 400, 0.1 M Mes
Crystal Properties Matthews coefficient Solvent content 3.44 64.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 148.06 α = 90 b = 95.85 β = 101.49 c = 158.06 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2016-12-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 2 0.979346 SOLEIL PROXIMA 2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.19 50 99.1 0.2023 7.37 3.87 72103 125.34
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.19 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5eyp, 4p40, 3ltm 3.19 49.03 72103 3606 99.2 0.175 0.173 0.1964 0.21 0.2337 RANDOM 115.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -9.5161 3.6415 19.8684 -10.3523
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 22.33 t_omega_torsion 2.63 t_angle_deg 1.16 t_bond_d 0.01 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 22.33 t_omega_torsion 2.63 t_angle_deg 1.16 t_bond_d 0.01 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it t_nbd t_improper_torsion t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 20123 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 218
Software Software Software Name Purpose BUSTER refinement XDS data reduction XDS data scaling PHASER phasing