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CDK2/CyclinA in complex with CGP74514A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1H1S
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 PROTEIN AT 5MG PER ML. 0.6 TO 0.8M KCL, 0.9 TO 1.2M (NH402SO4, AND 100MM HEPES (PH 7.0), 0.5mM Inhibitor
Crystal Properties Matthews coefficient Solvent content 2.97 58.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.318 α = 90 b = 136.687 β = 90 c = 150.454 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-07-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.92819 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 101.17 100 0.2 6.9 7.2 45869
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.65 2.74 100 1.3 7.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1H1S 2.65 101.17 43626 2243 99.88 0.20539 0.20289 0.2076 0.25503 0.2559 RANDOM 49.682
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.47 0.12 3.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.312 r_dihedral_angle_3_deg 20.17 r_dihedral_angle_4_deg 18.168 r_long_range_B_other 10.038 r_long_range_B_refined 10.037 r_scangle_other 6.909 r_dihedral_angle_1_deg 6.153 r_mcangle_it 6.05 r_mcangle_other 6.05 r_scbond_it 4.177
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.312 r_dihedral_angle_3_deg 20.17 r_dihedral_angle_4_deg 18.168 r_long_range_B_other 10.038 r_long_range_B_refined 10.037 r_scangle_other 6.909 r_dihedral_angle_1_deg 6.153 r_mcangle_it 6.05 r_mcangle_other 6.05 r_scbond_it 4.177 r_scbond_other 4.176 r_mcbond_it 3.773 r_mcbond_other 3.772 r_angle_other_deg 3.689 r_angle_refined_deg 1.719 r_chiral_restr 0.101 r_bond_refined_d 0.013 r_gen_planes_other 0.008 r_gen_planes_refined 0.007 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8994 Nucleic Acid Atoms Solvent Atoms 124 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling PHASER phasing