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Structure of RIP2 CARD domain fused to crystallisable MBP tag
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4IFP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.25 M NaNO3, and 22% (w/v) PEG 3350
Crystal Properties Matthews coefficient Solvent content 3.05 59.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.46 α = 90 b = 121.57 β = 109.04 c = 123.16 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2015-11-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.976 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.29 46.98 98.5 0.19 5.45 3.8 37320 131.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.29 3.38 1.37
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4IFP 3.3 46.98 35780 1540 99.07 0.23613 0.23489 0.26569 0.2433 RANDOM 129.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 7.36 4.79 -7.39 -2.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.348 r_dihedral_angle_3_deg 14.17 r_dihedral_angle_4_deg 11.836 r_dihedral_angle_1_deg 5.121 r_long_range_B_refined 3.965 r_long_range_B_other 3.965 r_mcangle_it 2.226 r_mcangle_other 2.226 r_scangle_other 1.77 r_mcbond_it 1.253
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.348 r_dihedral_angle_3_deg 14.17 r_dihedral_angle_4_deg 11.836 r_dihedral_angle_1_deg 5.121 r_long_range_B_refined 3.965 r_long_range_B_other 3.965 r_mcangle_it 2.226 r_mcangle_other 2.226 r_scangle_other 1.77 r_mcbond_it 1.253 r_mcbond_other 1.253 r_angle_refined_deg 1.053 r_scbond_it 0.953 r_scbond_other 0.953 r_angle_other_deg 0.872 r_chiral_restr 0.06 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14164 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 88
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing