☰ Navigation Tabs
Crystal structure of the C230A mutant of human IBA57
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6ESR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 293 0.1 M MES, 20% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.58 52.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.36 α = 76.27 b = 43.06 β = 76.17 c = 58.25 γ = 70.94
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2018-02-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.973 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 35.69 89.8 0.052 13.6 3.8 49014
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.59 87.7 0.58 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6ESR 1.55 35.69 41404 2180 89.09 0.16184 0.15966 0.1649 0.20332 0.206 RANDOM 30.846
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.74 -0.37 0.93 -1.05 -0.4 0.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.493 r_dihedral_angle_4_deg 16.141 r_dihedral_angle_3_deg 13.286 r_long_range_B_refined 7.292 r_long_range_B_other 7.279 r_scangle_other 6.992 r_dihedral_angle_1_deg 6.756 r_mcangle_other 6.517 r_mcangle_it 6.516 r_scbond_it 6.078
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.493 r_dihedral_angle_4_deg 16.141 r_dihedral_angle_3_deg 13.286 r_long_range_B_refined 7.292 r_long_range_B_other 7.279 r_scangle_other 6.992 r_dihedral_angle_1_deg 6.756 r_mcangle_other 6.517 r_mcangle_it 6.516 r_scbond_it 6.078 r_scbond_other 6.076 r_mcbond_it 5.644 r_mcbond_other 5.639 r_rigid_bond_restr 5.321 r_angle_refined_deg 1.902 r_angle_other_deg 1.477 r_chiral_restr 0.098 r_bond_refined_d 0.015 r_gen_planes_refined 0.011 r_bond_other_d 0.004 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2354 Nucleic Acid Atoms Solvent Atoms 130 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing