6FNV

Solution structure of mule deer prion protein with polymorphism S138

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.48 mM [U-99% 13C; U-99% 15N] mdPrP(S138), 20 mM sodium phosphate, 90 % H2O, 10 % [U-2H] D2O	90% H2O/10% D2O	0	5.5	1 bar	298	Varian Uniform NMR System 800
2	2D 1H-13C HSQC aliphatic	0.48 mM [U-99% 13C; U-99% 15N] mdPrP(S138), 20 mM sodium phosphate, 90 % H2O, 10 % [U-2H] D2O	90% H2O/10% D2O	0	5.5	1 bar	298	Varian Uniform NMR System 800
3	2D 1H-13C HSQC aromatic	0.48 mM [U-99% 13C; U-99% 15N] mdPrP(S138), 20 mM sodium phosphate, 90 % H2O, 10 % [U-2H] D2O	90% H2O/10% D2O	0	5.5	1 bar	298	Varian Uniform NMR System 800
4	3D HNCO	0.48 mM [U-99% 13C; U-99% 15N] mdPrP(S138), 20 mM sodium phosphate, 90 % H2O, 10 % [U-2H] D2O	90% H2O/10% D2O	0	5.5	1 bar	298	Varian Uniform NMR System 800
5	3D HN(CO)CA	0.48 mM [U-99% 13C; U-99% 15N] mdPrP(S138), 20 mM sodium phosphate, 90 % H2O, 10 % [U-2H] D2O	90% H2O/10% D2O	0	5.5	1 bar	298	Varian Uniform NMR System 800
6	3D HNCA	0.48 mM [U-99% 13C; U-99% 15N] mdPrP(S138), 20 mM sodium phosphate, 90 % H2O, 10 % [U-2H] D2O	90% H2O/10% D2O	0	5.5	1 bar	298	Varian Uniform NMR System 800
7	3D CBCA(CO)NH	0.48 mM [U-99% 13C; U-99% 15N] mdPrP(S138), 20 mM sodium phosphate, 90 % H2O, 10 % [U-2H] D2O	90% H2O/10% D2O	0	5.5	1 bar	298	Varian Uniform NMR System 800
8	3D HNCACB	0.48 mM [U-99% 13C; U-99% 15N] mdPrP(S138), 20 mM sodium phosphate, 90 % H2O, 10 % [U-2H] D2O	90% H2O/10% D2O	0	5.5	1 bar	298	Varian Uniform NMR System 800
9	3D HBHA(CO)NH	0.48 mM [U-99% 13C; U-99% 15N] mdPrP(S138), 20 mM sodium phosphate, 90 % H2O, 10 % [U-2H] D2O	90% H2O/10% D2O	0	5.5	1 bar	298	Varian Uniform NMR System 800
10	3D C(CO)NH	0.48 mM [U-99% 13C; U-99% 15N] mdPrP(S138), 20 mM sodium phosphate, 90 % H2O, 10 % [U-2H] D2O	90% H2O/10% D2O	0	5.5	1 bar	298	Varian Uniform NMR System 800
11	3D HCCH-TOCSY	0.48 mM [U-99% 13C; U-99% 15N] mdPrP(S138), 20 mM sodium phosphate, 90 % H2O, 10 % [U-2H] D2O	90% H2O/10% D2O	0	5.5	1 bar	298	Varian Uniform NMR System 800
12	3D HCCH-TOCSY	0.48 mM [U-99% 13C; U-99% 15N] mdPrP(S138), 20 mM sodium phosphate, 90 % H2O, 10 % [U-2H] D2O	90% H2O/10% D2O	0	5.5	1 bar	298	Varian Uniform NMR System 800
13	3D 1H-15N NOESY	0.48 mM [U-99% 13C; U-99% 15N] mdPrP(S138), 20 mM sodium phosphate, 90 % H2O, 10 % [U-2H] D2O	90% H2O/10% D2O	0	5.5	1 bar	298	Varian Uniform NMR System 800
14	3D 1H-13C NOESY aliphatic	0.48 mM [U-99% 13C; U-99% 15N] mdPrP(S138), 20 mM sodium phosphate, 90 % H2O, 10 % [U-2H] D2O	90% H2O/10% D2O	0	5.5	1 bar	298	Varian Uniform NMR System 800
15	3D 1H-13C NOESY aromatic	0.48 mM [U-99% 13C; U-99% 15N] mdPrP(S138), 20 mM sodium phosphate, 90 % H2O, 10 % [U-2H] D2O	90% H2O/10% D2O	0	5.5	1 bar	298	Varian Uniform NMR System 800

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	Uniform NMR System	800

NMR Refinement
Method	Details	Software
simulated annealing		YASARA NOVA

NMR Ensemble Information
Conformer Selection Criteria	13
Conformers Calculated Total Number	20
Conformers Submitted Total Number	20
Representative Model	1 (13)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	YASARA NOVA		Krieger, E. et al
2	structure calculation	CYANA	3.1	Guntert, Mumenthaler and Wuthrich
3	chemical shift assignment	CARA	1.9.1b18	Keller and Wuthrich
4	peak picking	Sparky	3.114	Goddard
5	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
6	data analysis	TALOS		Cornilescu, Delaglio and Bax
7	collection	VNMR		Varian
8	data analysis	PSVS		Bhattacharya and Montelione
9	data analysis	CcpNmr Analysis		CCPN