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Structural dynamics and catalytic properties of a multi-modular xanthanase (Pt derivative)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 20-22% PEG3350, 0.1M Bis-Tris propane
Crystal Properties Matthews coefficient Solvent content 2.86 57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.27 α = 90 b = 103.27 β = 90 c = 210.35 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2013-03-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 1.07 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 52.29 100 0.082 0.999 16 9.9 88513
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 100 0.64 0.876 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 52.29 84008 4435 99.98 0.17458 0.17272 0.1799 0.20976 0.2152 RANDOM 39.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.42 -0.21 -0.42 1.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.1 r_dihedral_angle_4_deg 19.251 r_dihedral_angle_3_deg 13.873 r_dihedral_angle_1_deg 7.174 r_long_range_B_refined 5.415 r_long_range_B_other 5.344 r_angle_refined_deg 1.524 r_scangle_other 1.337 r_mcangle_it 1.059 r_mcangle_other 1.059
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.1 r_dihedral_angle_4_deg 19.251 r_dihedral_angle_3_deg 13.873 r_dihedral_angle_1_deg 7.174 r_long_range_B_refined 5.415 r_long_range_B_other 5.344 r_angle_refined_deg 1.524 r_scangle_other 1.337 r_mcangle_it 1.059 r_mcangle_other 1.059 r_angle_other_deg 0.994 r_scbond_it 0.889 r_scbond_other 0.888 r_mcbond_it 0.732 r_mcbond_other 0.719 r_chiral_restr 0.1 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7433 Nucleic Acid Atoms Solvent Atoms 825 Heterogen Atoms 43
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling CRANK2 phasing