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Antibody derived (Abd-5) small molecule binding to KRAS.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 277 8-15% w/v Polyethylene glycol 3350 and 0.2M lithium citrate
Crystal Properties Matthews coefficient Solvent content 2.46 49.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.23 α = 90 b = 117.215 β = 90 c = 156.446 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2015-09-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 93.81 100 0.058 0.067 0.033 0.995 19.1 7.4 36640
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.72 0.88 0.748
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.6 93.81 34830 1723 99.91 0.20455 0.2032 0.2143 0.23301 0.2407 RANDOM 63.248
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.24 9.14 -5.9
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.094 r_dihedral_angle_3_deg 15.904 r_dihedral_angle_4_deg 14.841 r_long_range_B_refined 12.233 r_long_range_B_other 12.232 r_scangle_other 9.577 r_mcangle_it 7.504 r_mcangle_other 7.504 r_scbond_it 6.084 r_scbond_other 6.083
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.094 r_dihedral_angle_3_deg 15.904 r_dihedral_angle_4_deg 14.841 r_long_range_B_refined 12.233 r_long_range_B_other 12.232 r_scangle_other 9.577 r_mcangle_it 7.504 r_mcangle_other 7.504 r_scbond_it 6.084 r_scbond_other 6.083 r_dihedral_angle_1_deg 5.504 r_mcbond_it 4.959 r_mcbond_other 4.958 r_angle_refined_deg 1.702 r_angle_other_deg 0.947 r_chiral_restr 0.082 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7700 Nucleic Acid Atoms Solvent Atoms 28 Heterogen Atoms 402
Software Software Software Name Purpose REFMAC refinement xia2 data reduction PHASER phasing