6F3Y

Backbone structure of Des-Arg10-Kallidin (DAKD) peptide bound to human Bradykinin 1 Receptor (B1R) determined by DNP-enhanced MAS SSNMR


SOLID-STATE NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 13C-13C DQ-SQ312.5 uM [U-13C; U-15N] K1 Des-Arg10-Kallidin (DAKD), 312.5 uM not labeled human B1R, 10 mM not labeled AMUPOL, 50 mM not labeled HEPES, 150 mM not labeled NaCl, 4 % w/v not labeled DDM, 0.4 % w/v not labeled CHS10% H2O/ 40%D2O/ 50% d8-glycerol175 mM7.61 atm110Bruker AVANCE II 400
22D 15N-13C TEDOR312.5 uM [U-13C; U-15N] K1 Des-Arg10-Kallidin (DAKD), 312.5 uM not labeled human B1R, 10 mM not labeled AMUPOL, 50 mM not labeled HEPES, 150 mM not labeled NaCl, 4 % w/v not labeled DDM, 0.4 % w/v not labeled CHS10% H2O/ 40%D2O/ 50% d8-glycerol175 mM7.61 atm110Bruker AVANCE II 400
32D 13C-13C DQ-SQ312.5 uM [U-13C; U-15N] R2S7 Des-Arg10-Kallidin (DAKD), 312.5 uM not labeled human B1R, 10 mM not labeled AMUPOL, 50 mM not labeled HEPES, 150 mM not labeled NaCl, 4 % w/v not labeled DDM, 0.4 % w/v not labeled CHS10% H2O/ 40%D2O/ 50% d8-glycerol175 mM7.61 atm110Bruker AVANCE II 400
42D 15N-13C TEDOR312.5 uM [U-13C; U-15N] R2S7 Des-Arg10-Kallidin (DAKD), 312.5 uM not labeled human B1R, 10 mM not labeled AMUPOL, 50 mM not labeled HEPES, 150 mM not labeled NaCl, 4 % w/v not labeled DDM, 0.4 % w/v not labeled CHS10% H2O/ 40%D2O/ 50% d8-glycerol175 mM7.61 atm110Bruker AVANCE II 400
52D 13C-13C DQ-SQ312.5 uM [U-13C; U-15N] P3 Des-Arg10-Kallidin (DAKD), 312.5 uM not labeled human B1R, 10 mM not labeled AMUPOL, 50 mM not labeled HEPES, 150 mM not labeled NaCl, 4 % w/v not labeled DDM, 0.4 % w/v not labeled CHS10% H2O/ 40%D2O/ 50% d8-glycerol175 mM7.61 atm110Bruker AVANCE II 400
92D 15N-13C TEDOR312.5 uM [U-13C; U-15N] P3 Des-Arg10-Kallidin (DAKD), 312.5 uM not labeled human B1R, 10 mM not labeled AMUPOL, 50 mM not labeled HEPES, 150 mM not labeled NaCl, 4 % w/v not labeled DDM, 0.4 % w/v not labeled CHS10% H2O/ 40%D2O/ 50% d8-glycerol175 mM7.61 atm110Bruker AVANCE II 400
82D 13C-13C DQ-SQ312.5 uM [U-13C; U-15N] P4 Des-Arg10-Kallidin (DAKD), 312.5 uM not labeled human B1R, 10 mM not labeled AMUPOL, 50 mM not labeled HEPES, 150 mM not labeled NaCl, 4 % w/v not labeled DDM, 0.4 % w/v not labeled CHS10% H2O/ 40%D2O/ 50% d8-glycerol175 mM7.61 atm110Bruker AVANCE II 400
72D 15N-13C TEDOR312.5 uM [U-13C; U-15N] P4 Des-Arg10-Kallidin (DAKD), 312.5 uM not labeled human B1R, 10 mM not labeled AMUPOL, 50 mM not labeled HEPES, 150 mM not labeled NaCl, 4 % w/v not labeled DDM, 0.4 % w/v not labeled CHS10% H2O/ 40%D2O/ 50% d8-glycerol175 mM7.61 atm110Bruker AVANCE II 400
62D 13C-13C DQ-SQ312.5 uM [U-13C; U-15N] G5F6 Des-Arg10-Kallidin (DAKD), 312.5 uM not labeled human B1R, 10 mM not labeled AMUPOL, 50 mM not labeled HEPES, 150 mM not labeled NaCl, 4 % w/v not labeled DDM, 0.4 % w/v not labeled CHS10% H2O/ 40%D2O/ 50% d8-glycerol175 mM7.61 atm110Bruker AVANCE II 400
102D 15N-13C TEDOR312.5 uM [U-13C; U-15N] G5F6 Des-Arg10-Kallidin (DAKD), 312.5 uM not labeled human B1R, 10 mM not labeled AMUPOL, 50 mM not labeled HEPES, 150 mM not labeled NaCl, 4 % w/v not labeled DDM, 0.4 % w/v not labeled CHS10% H2O/ 40%D2O/ 50% d8-glycerol175 mM7.61 atm110Bruker AVANCE II 400
112D 13C-13C DQ-SQ312.5 uM [U-13C; U-15N] S7P9 Des-Arg10-Kallidin (DAKD), 312.5 uM not labeled human B1R, 10 mM not labeled AMUPOL, 50 mM not labeled HEPES, 150 mM not labeled NaCl, 4 % w/v not labeled DDM, 0.4 % w/v not labeled CHS10% H2O/ 40%D2O/ 50% d8-glycerol175 mM7.61 atm110Bruker AVANCE II 400
132D 13C-13C DQ-SQ312.5 uM [U-13C; U-15N] S7P9 Des-Arg10-Kallidin (DAKD), 312.5 uM not labeled human B1R, 10 mM not labeled AMUPOL, 50 mM not labeled HEPES, 150 mM not labeled NaCl, 4 % w/v not labeled DDM, 0.4 % w/v not labeled CHS10% H2O/ 40%D2O/ 50% d8-glycerol175 mM7.61 atm110Bruker AVANCE II 400
121D REDOR/DQF double-filter 13C312.5 uM [U-13C; U-15N] S7P9 Des-Arg10-Kallidin (DAKD), 312.5 uM not labeled human B1R, 10 mM not labeled AMUPOL, 50 mM not labeled HEPES, 150 mM not labeled NaCl, 4 % w/v not labeled DDM, 0.4 % w/v not labeled CHS10% H2O/ 40%D2O/ 50% d8-glycerol175 mM7.61 atm110Bruker AVANCE II 400
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE II400
NMR Refinement
MethodDetailsSoftware
torsion angle dynamicsCYANA
naused in joint analysis, see paper for more detailsTALOS-N
naused in joint analysis, see paper for more detailsPREDITOR
naused in joint analysis, see paper for more detailsFlexible-meccano
naused in joint analysis, see paper for more detailsSHIFTX
naused in joint analysis, see paper for more detailsCircos
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations
Conformers Calculated Total Number500
Conformers Submitted Total Number10
Representative Model4 (closest to the average)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure calculationCYANA2.1Guntert, Mumenthaler and Wuthrich
2chemical shift assignmentTopSpinBruker Biospin
3collectionTopSpinBruker Biospin
4data analysisTopSpinBruker Biospin
5processingTopSpinBruker Biospin
6refinementCYANAGuntert, Mumenthaler and Wuthrich
7refinementTALOS-NShen, Bax
8refinementPREDITORBerjanskii, Neal, Wishart
9refinementFlexible-meccanoOzone, Bauer, Salmon, Huang, Jensen, Segard, Bernado, Charavay, Blackledge
10refinementSHIFTX1.1Neal, Nip, Zhang, Wishart
11refinementCircos0.69.3Krzywinski, Schein, Birol, Connors, Gascoyne, Horsman, Jones, A Marra
12data analysisTALOS+Shen, Delaglio, Cornilescu, Bax