6EZ4

NMR structure of the C-terminal domain of the human RPAP3 protein


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1 mM [U-13C; U-15N] RPAP3 C-terminal domain, 150 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM TCEP95% H2O/5% D2O150 mM6.41 atm298Bruker AVANCE III 600
22D 1H-13C HSQC aliphatic1 mM [U-13C; U-15N] RPAP3 C-terminal domain, 150 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM TCEP95% H2O/5% D2O150 mM6.41 atm298Bruker AVANCE III 600
32D 1H-13C HSQC aromatic1 mM [U-13C; U-15N] RPAP3 C-terminal domain, 150 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM TCEP95% H2O/5% D2O150 mM6.41 atm298Bruker AVANCE III 600
43D HNCA1 mM [U-13C; U-15N] RPAP3 C-terminal domain, 150 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM TCEP95% H2O/5% D2O150 mM6.41 atm298Bruker AVANCE III 600
53D HNCACB1 mM [U-13C; U-15N] RPAP3 C-terminal domain, 150 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM TCEP95% H2O/5% D2O150 mM6.41 atm298Bruker AVANCE III 600
163D CBCA(CO)NH1 mM [U-13C; U-15N] RPAP3 C-terminal domain, 150 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM TCEP95% H2O/5% D2O150 mM6.41 atm298Bruker AVANCE III 600
153D HNCO1 mM [U-13C; U-15N] RPAP3 C-terminal domain, 150 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM TCEP95% H2O/5% D2O150 mM6.41 atm298Bruker AVANCE III 600
143D HNCACO1 mM [U-13C; U-15N] RPAP3 C-terminal domain, 150 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM TCEP95% H2O/5% D2O150 mM6.41 atm298Bruker AVANCE III 600
133D HNCO E.cosy1 mM [U-13C; U-15N] RPAP3 C-terminal domain, 150 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM TCEP95% H2O/5% D2O150 mM6.41 atm298Bruker AVANCE III 600
123D HNHA1 mM [U-13C; U-15N] RPAP3 C-terminal domain, 150 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM TCEP95% H2O/5% D2O150 mM6.41 atm298Bruker AVANCE III 600
113D H(CCO)NH1 mM [U-13C; U-15N] RPAP3 C-terminal domain, 150 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM TCEP95% H2O/5% D2O150 mM6.41 atm298Bruker AVANCE III 600
103D (H)CCCONH1 mM [U-13C; U-15N] RPAP3 C-terminal domain, 150 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM TCEP95% H2O/5% D2O150 mM6.41 atm298Bruker AVANCE III 600
93D HCCH-TOCSY1 mM [U-13C; U-15N] RPAP3 C-terminal domain, 150 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM TCEP95% H2O/5% D2O150 mM6.41 atm298Bruker AVANCE III 600
83D HCCH-COSY1 mM [U-13C; U-15N] RPAP3 C-terminal domain, 150 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM TCEP95% H2O/5% D2O150 mM6.41 atm298Bruker AVANCE III 600
73D HBHA(CO)NH1 mM [U-13C; U-15N] RPAP3 C-terminal domain, 150 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM TCEP95% H2O/5% D2O150 mM6.41 atm298Bruker AVANCE III 600
62D 1H-1H NOESY1 mM [U-13C; U-15N] RPAP3 C-terminal domain, 150 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM TCEP95% H2O/5% D2O150 mM6.41 atm298Bruker AVANCE III 600
183D 1H-15N NOESY1 mM [U-13C; U-15N] RPAP3 C-terminal domain, 150 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM TCEP95% H2O/5% D2O150 mM6.41 atm298Bruker AVANCE III 600
173D 1H-13C NOESY1 mM [U-13C; U-15N] RPAP3 C-terminal domain, 150 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM TCEP95% H2O/5% D2O150 mM6.41 atm298Bruker AVANCE III 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III600
NMR Refinement
MethodDetailsSoftware
molecular dynamicsrefinement performed via the AMPS-NMR web portalAmber
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest restraint energies
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpinBruker Biospin
2chemical shift assignmentCARAKeller and Wuthrich
3structure calculationCYANAGuntert, Mumenthaler and Wuthrich
4structure calculationTALOSCornilescu, Delaglio and Bax
5refinementAmberCase, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman