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Quadruplex with flipped tetrad formed by the c-myc promoter sequence
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 10 mM NA potassium phosphate 90% H2O/10% D2O 10 mM 7 1 atm 303 Bruker AVANCE 600 2 2D DQF-COSY 10 mM NA potassium phosphate 90% H2O/10% D2O 10 mM 7 1 atm 303 Bruker AVANCE 600 3 2D 1H-1H NOESY 10 mM NA potassium phosphate 100% D2O 10 mM 7 1 atm 303 Bruker AVANCE 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600
NMR Refinement Method Details Software DGSA-distance geometry simulated annealing Xplor-NIH simulated annealing Amber molecular dynamics Amber
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 10 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman 2 structure calculation Xplor-NIH Schwieters, Kuszewski, Tjandra and Clore 3 chemical shift assignment CcpNmr Analysis CCPN 4 peak picking CcpNmr Analysis CCPN 5 structure calculation Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman