X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP82950.1 M Tris-HCl 1.2 M sodium malonate
Crystal Properties
Matthews coefficientSolvent content
2.958.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 53.16α = 90
b = 65.73β = 110.94
c = 72.89γ = 90
Symmetry
Space GroupP 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2011-08-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-10.9334ESRFID14-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.63499.50.030.030.021387.6107515

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE3TMY2.6234.0381417270899.2780.2150.2120.267591.73
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-3.3361.269-5.2915.921
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.021
r_dihedral_angle_3_deg17.2
r_dihedral_angle_4_deg14.755
r_lrange_it12.981
r_lrange_other12.981
r_scangle_it10.774
r_scangle_other10.771
r_mcangle_other9.57
r_mcangle_it9.568
r_scbond_it7.209
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.021
r_dihedral_angle_3_deg17.2
r_dihedral_angle_4_deg14.755
r_lrange_it12.981
r_lrange_other12.981
r_scangle_it10.774
r_scangle_other10.771
r_mcangle_other9.57
r_mcangle_it9.568
r_scbond_it7.209
r_scbond_other7.207
r_mcbond_it6.804
r_mcbond_other6.796
r_dihedral_angle_1_deg6.174
r_angle_refined_deg1.652
r_angle_other_deg0.997
r_nbd_refined0.216
r_nbd_other0.192
r_symmetry_nbd_refined0.175
r_nbtor_refined0.164
r_symmetry_nbd_other0.149
r_ncsr_local_group_30.113
r_ncsr_local_group_20.11
r_symmetry_xyhbond_nbd_refined0.103
r_ncsr_local_group_10.103
r_chiral_restr0.099
r_symmetry_nbtor_other0.078
r_xyhbond_nbd_refined0.049
r_bond_refined_d0.012
r_gen_planes_refined0.006
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2688
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
xia2data reduction
Aimlessdata scaling
PHASERphasing