☰ Navigation Tabs
crystal structure of a Pholiota squarrosa lectin unliganded
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 292 18% butane1,4diol, 300mM zinc acetate, 100 mM imidazole ph 7.0
Crystal Properties Matthews coefficient Solvent content 2.17 43.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 28.229 α = 90 b = 67.67 β = 97.25 c = 30.985 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2016-07-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.984 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 33.83 99.5 0.045 0.041 0.997 14.8 4 12666
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 97.6 0.349 0.304 0.892 3 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 33.83 11985 661 99.32 0.17298 0.17091 0.18 0.21119 0.2169 RANDOM 25.07
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.06 -0.72 1.54 0.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.229 r_dihedral_angle_4_deg 27.878 r_dihedral_angle_3_deg 11.096 r_dihedral_angle_1_deg 6.82 r_long_range_B_refined 5.761 r_long_range_B_other 5.658 r_scangle_other 4.009 r_scbond_it 2.913 r_scbond_other 2.913 r_mcangle_other 2.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.229 r_dihedral_angle_4_deg 27.878 r_dihedral_angle_3_deg 11.096 r_dihedral_angle_1_deg 6.82 r_long_range_B_refined 5.761 r_long_range_B_other 5.658 r_scangle_other 4.009 r_scbond_it 2.913 r_scbond_other 2.913 r_mcangle_other 2.39 r_mcangle_it 2.389 r_mcbond_it 1.683 r_mcbond_other 1.672 r_angle_refined_deg 1.62 r_angle_other_deg 0.932 r_chiral_restr 0.097 r_bond_refined_d 0.015 r_gen_planes_refined 0.009 r_bond_other_d 0.006 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 917 Nucleic Acid Atoms Solvent Atoms 123 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling SHELXCD phasing