Experiment: 6EJU

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	4.6	291	1.8 M ammonium sulfate, 0.1 M sodium acetate pH 4.6 0.02 M MnCl2 (soaked)

Crystal Properties
Matthews coefficient	Solvent content
2.4	47.6

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 23.227	α = 75.51
b = 48	β = 89.53
c = 52.203	γ = 89.6

Symmetry
Space Group	P 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2013-12-04	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	BESSY BEAMLINE 14.2	1.823	BESSY	14.2

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.9	46.47	90.1	0.045	0.056	0.034	0.979	19.1	4.7		15502		-3	21.43

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.9	1.94	64.6		0.182	0.236	0.148	0.639	5.4	3.9

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	6ejt	1.9	46.47	15489	795	90.04	0.1738	0.1736	0.1767	RANDOM	25.4376

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.26	0.34	-1.05	-0.12	0.77	0.22

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	33.208
r_dihedral_angle_4_deg	14.27
r_dihedral_angle_3_deg	13.366
r_dihedral_angle_1_deg	5.739
r_angle_other_deg	3.733
r_mcangle_it	2.786
r_mcbond_it	1.892
r_mcbond_other	1.855
r_angle_refined_deg	1.67
r_chiral_restr	0.09

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	33.208
r_dihedral_angle_4_deg	14.27
r_dihedral_angle_3_deg	13.366
r_dihedral_angle_1_deg	5.739
r_angle_other_deg	3.733
r_mcangle_it	2.786
r_mcbond_it	1.892
r_mcbond_other	1.855
r_angle_refined_deg	1.67
r_chiral_restr	0.09
r_bond_refined_d	0.014
r_gen_planes_other	0.011
r_gen_planes_refined	0.008
r_bond_other_d

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1676
Nucleic Acid Atoms
Solvent Atoms	242
Heterogen Atoms	40

Software

Software
Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
XDS	data scaling
PHASER	phasing

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.