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Crystal structure of Mycobacterium tuberculosis ICL2 in the apo form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 9% w/v PEG 4K, 18% v/v glycerol, 0.02 M amino acids, 0.1 M MES/imidazole pH 6.9
Crystal Properties Matthews coefficient Solvent content 2.55 51.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.824 α = 90 b = 136.078 β = 99.59 c = 138.924 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2017-02-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.95370 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 136.98 99.9 11.2 7.7 323074
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.83
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 48.32 306789 16234 99.85 0.16999 0.16828 0.1808 0.20254 0.2121 RANDOM 29.519
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.13 0.25 0.94 -1.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.611 r_dihedral_angle_4_deg 15.721 r_dihedral_angle_3_deg 12.973 r_long_range_B_refined 9.8 r_long_range_B_other 9.628 r_scangle_other 8.498 r_scbond_it 6.282 r_scbond_other 6.281 r_dihedral_angle_1_deg 5.538 r_mcangle_it 5.353
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.611 r_dihedral_angle_4_deg 15.721 r_dihedral_angle_3_deg 12.973 r_long_range_B_refined 9.8 r_long_range_B_other 9.628 r_scangle_other 8.498 r_scbond_it 6.282 r_scbond_other 6.281 r_dihedral_angle_1_deg 5.538 r_mcangle_it 5.353 r_mcangle_other 5.353 r_mcbond_it 4.258 r_mcbond_other 4.255 r_angle_refined_deg 0.988 r_angle_other_deg 0.849 r_chiral_restr 0.052 r_bond_refined_d 0.005 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 23222 Nucleic Acid Atoms Solvent Atoms 3468 Heterogen Atoms 37
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing