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SAMHD1 Bound to Vidarabine-TP in the Catalytic Pocket
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 298 100 MM BIS-TRIS PH 6.7 AND 25% (W/V) PEG1500
Crystal Properties Matthews coefficient Solvent content 2.28 45.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.862 α = 90 b = 146.724 β = 114.45 c = 99.594 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2018-01-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS-II BEAMLINE 17-ID-1 0.92014 NSLS-II 17-ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 97.4 0.107 0.989 10 3.5 75598
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.54 97.1 0.737 0.688 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.5 50 71792 3793 96.26 0.17701 0.17533 0.173 0.20792 0.2017 RANDOM 72.623
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.82 2 -0.95 2.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.015 r_dihedral_angle_3_deg 17.758 r_dihedral_angle_4_deg 15.902 r_long_range_B_refined 8.694 r_long_range_B_other 8.694 r_dihedral_angle_1_deg 5.48 r_scangle_other 4.986 r_mcangle_it 4.346 r_mcangle_other 4.346 r_scbond_it 3.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.015 r_dihedral_angle_3_deg 17.758 r_dihedral_angle_4_deg 15.902 r_long_range_B_refined 8.694 r_long_range_B_other 8.694 r_dihedral_angle_1_deg 5.48 r_scangle_other 4.986 r_mcangle_it 4.346 r_mcangle_other 4.346 r_scbond_it 3.19 r_scbond_other 3.167 r_mcbond_it 2.789 r_mcbond_other 2.783 r_angle_refined_deg 2.034 r_angle_other_deg 1.151 r_chiral_restr 0.125 r_bond_refined_d 0.019 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15732 Nucleic Acid Atoms Solvent Atoms 156 Heterogen Atoms 409
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing