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Mouse diabetogenic TCR 8F10
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 14% PEG 3350, 100mM sodium acetate at pH6.0
Crystal Properties Matthews coefficient Solvent content 2.52 51.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.016 α = 111.66 b = 69.691 β = 111.03 c = 69.699 γ = 94.86
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2014-12-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.979500 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.71 50 91.5 11.62 4.1 91564
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.71 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.71 48.21 91564 4820 90.96 0.17389 0.17081 0.1806 0.23113 0.2366 RANDOM 39.346
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.75 0.32 -0.41 -0.53 -0.47 1.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.215 r_sphericity_bonded 19.456 r_dihedral_angle_4_deg 17.375 r_dihedral_angle_3_deg 15.661 r_dihedral_angle_1_deg 7.861 r_long_range_B_refined 6.358 r_long_range_B_other 6.358 r_scangle_other 6.095 r_rigid_bond_restr 5.698 r_scbond_it 5.279
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.215 r_sphericity_bonded 19.456 r_dihedral_angle_4_deg 17.375 r_dihedral_angle_3_deg 15.661 r_dihedral_angle_1_deg 7.861 r_long_range_B_refined 6.358 r_long_range_B_other 6.358 r_scangle_other 6.095 r_rigid_bond_restr 5.698 r_scbond_it 5.279 r_scbond_other 5.279 r_mcangle_other 5.197 r_mcangle_it 5.196 r_mcbond_other 4.358 r_mcbond_it 4.356 r_angle_refined_deg 1.715 r_angle_other_deg 0.608 r_chiral_restr 0.086 r_bond_refined_d 0.015 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6770 Nucleic Acid Atoms Solvent Atoms 319 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing