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CS-rosetta determined structures of the C-terminal domain of AlgF from P. aeruginosa
SOLUTION NMR - SOLUTION SCATTERING
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1 mM [U-13C; U-15N] AlgF, 50 mM potassium phosphate, 2 % v/v glycerol, 10 mM DTT 90% H2O/10% D2O 0.05 M 6.8 1 atm 298 Varian INOVA 500 2 3D HNCO 1 mM [U-13C; U-15N] AlgF, 50 mM potassium phosphate, 2 % v/v glycerol, 10 mM DTT 90% H2O/10% D2O 0.05 M 6.8 1 atm 298 Varian INOVA 500 3 3D HNCA 1 mM [U-13C; U-15N] AlgF, 50 mM potassium phosphate, 2 % v/v glycerol, 10 mM DTT 90% H2O/10% D2O 0.05 M 6.8 1 atm 298 Varian INOVA 500 4 3D HNCACB 1 mM [U-13C; U-15N] AlgF, 50 mM potassium phosphate, 2 % v/v glycerol, 10 mM DTT 90% H2O/10% D2O 0.05 M 6.8 1 atm 298 Varian INOVA 500 5 3D CBCA(CO)NH 1 mM [U-13C; U-15N] AlgF, 50 mM potassium phosphate, 2 % v/v glycerol, 10 mM DTT 90% H2O/10% D2O 0.05 M 6.8 1 atm 298 Varian INOVA 500 10 3D C(CO)NH 1 mM [U-13C; U-15N] AlgF, 50 mM potassium phosphate, 2 % v/v glycerol, 10 mM DTT 90% H2O/10% D2O 0.05 M 6.8 1 atm 298 Varian INOVA 500 9 3D HCCH-TOCSY 1 mM [U-13C; U-15N] AlgF, 50 mM potassium phosphate, 2 % v/v glycerol, 10 mM DTT 90% H2O/10% D2O 0.05 M 6.8 1 atm 298 Varian INOVA 500 8 3D 1H-15N NOESY 1 mM [U-13C; U-15N] AlgF, 50 mM potassium phosphate, 2 % v/v glycerol, 10 mM DTT 90% H2O/10% D2O 0.05 M 6.8 1 atm 298 Varian INOVA 800 7 3D 1H-13C NOESY aliphatic 1 mM [U-13C; U-15N] AlgF, 50 mM potassium phosphate, 2 % v/v glycerol, 10 mM DTT 90% H2O/10% D2O 0.05 M 6.8 1 atm 298 Varian INOVA 800 6 3D 1H-13C NOESY aromatic 1 mM [U-13C; U-15N] AlgF, 50 mM potassium phosphate, 2 % v/v glycerol, 10 mM DTT 90% H2O/10% D2O 0.05 M 6.8 1 atm 298 Varian INOVA 800
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 500 2 Varian INOVA 800
NMR Refinement Method Details Software molecular dynamics CS-ROSETTA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 3000 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment NMRView Johnson, One Moon Scientific 2 chemical shift assignment Analysis CCPN 3 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 4 data analysis NMRDraw Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 5 refinement CS-ROSETTA Shen, Vernon, Baker and Bax 7 peak picking NMRView Johnson, One Moon Scientific 8 peak picking Analysis CCPN 9 structure calculation CS-ROSETTA Shen, Vernon, Baker and Bax