6CL3
LyeTxI-b, a synthetic peptide derived from Lycosa erythrognatha spider venom, shows potent antibiotic activity, in vitro and in vivo
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 2 mM LyeTxI-b, 20 mM phosphate buffer, 1 mM DSS | TFE-d2/H2O (60:40%, v/v) | not applicable | 7.0 | 1 atm | 293 | Bruker Avance III 600 600.043 |
2 | 2D 1H-1H NOESY | 2 mM LyeTxI-b, 20 mM phosphate buffer, 1 mM DSS | TFE-d2/H2O (60:40%, v/v) | not applicable | 7.0 | 1 atm | 293 | Bruker Avance III 600 600.043 |
3 | 2D 1H-13C HSQC | 2 mM LyeTxI-b, 20 mM phosphate buffer, 1 mM DSS | TFE-d2/H2O (60:40%, v/v) | not applicable | 7.0 | 1 atm | 293 | Bruker Avance III 600 600.043 |
4 | 2D 1H-15N HMQC | 2 mM LyeTxI-b, 20 mM phosphate buffer, 1 mM DSS | TFE-d2/H2O (60:40%, v/v) | not applicable | 7.0 | 1 atm | 293 | Bruker Avance III 600 600.043 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | Avance III 600 | 600.043 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | X-PLOR NIH |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
5 | collection | TOPSPIN | Bruker Biospin | |
3 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
4 | data analysis | Molmol | Koradi, Billeter and Wuthrich | |
6 | structure calculation | TALOS | Cornilescu, Delaglio and Bax | |
7 | structure calculation | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore |