6CCW
Hybrid-2 form Human Telomeric G Quadruplex in Complex with Epiberberine
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 880 uM DNA (26-MER), 880 uM epiberberine | 90% H2O/10% D2O | 100 mM | 7 | 1 atm | 298 | Bruker AVANCE 600 |
2 | 2D 1H-1H TOCSY | 880 uM DNA (26-MER), 880 uM epiberberine | 90% H2O/10% D2O | 100 mM | 7 | 1 atm | 298 | Bruker AVANCE 600 |
3 | 2D 1H-1H NOESY | 880 uM DNA (26-MER), 880 uM epiberberine | 90% H2O/10% D2O | 100 mM | 7 | 1 atm | 288 | Bruker AVANCE 600 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | X-PLOR NIH |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 30 |
Conformers Submitted Total Number | 15 |
Representative Model | 1 (fewest violations) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | Sparky | Goddard | |
2 | structure calculation | Insight II | Accelrys Software Inc. | |
3 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
4 | peak picking | Sparky | Goddard |