6CCJ

NMR structure of the Rous sarcoma virus matrix protein (M domain)


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC.5 mM [U-95% 15N] Matrix protein, 50 mM sodium phosphate, 50 mM sodium chloride, 2 M TCEP95% H2O/5% D2O0.1 M6.01 atm305Bruker AVANCE II 700
23D HNCA0.5 mM [U-95% 13C; U-95% 15N] RSV MA, 50 mM sodium phosphate, 50 mM sodium chloride, 2 mM TCEP95% H2O/5% D2O0.1 M6.01 atm305Bruker AVANCE II 700
33D HN(CO)CA0.5 mM [U-95% 13C; U-95% 15N] RSV MA, 50 mM sodium phosphate, 50 mM sodium chloride, 2 mM TCEP95% H2O/5% D2O0.1 M6.01 atm305Bruker AVANCE II 700
43D HNCACB0.5 mM [U-95% 13C; U-95% 15N] RSV MA, 50 mM sodium phosphate, 50 mM sodium chloride, 2 mM TCEP95% H2O/5% D2O0.1 M6.01 atm305Bruker AVANCE II 700
53D CBCA(CO)NH0.5 mM [U-95% 13C; U-95% 15N] RSV MA, 50 mM sodium phosphate, 50 mM sodium chloride, 2 mM TCEP95% H2O/5% D2O0.1 M6.01 atm305Bruker AVANCE II 700
63D HCCH-TOCSY0.5 mM [U-95% 13C] Matrix protein, 50 mM sodium phosphate, 50 mM sodium chloride, 2 mM TCEP100% D2O0.1 M6.01 atm305Bruker AVANCE II 700
72D 1H-13C HSQC0.5 mM [U-95% 13C] Matrix protein, 50 mM sodium phosphate, 50 mM sodium chloride, 2 mM TCEP100% D2O0.1 M6.01 atm305Bruker AVANCE II 700
83D 1H-15N TOCSY-HSQC.5 mM [U-95% 15N] Matrix protein, 50 mM sodium phosphate, 50 mM sodium chloride, 2 M TCEP95% H2O/5% D2O0.1 M6.01 atm305Bruker AVANCE II 700
93D 1H-15N NOESY-HSQC.5 mM [U-95% 15N] Matrix protein, 50 mM sodium phosphate, 50 mM sodium chloride, 2 M TCEP95% H2O/5% D2O0.1 M6.01 atm305Bruker AVANCE II 700
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE II700
NMR Refinement
MethodDetailsSoftware
torsion angle dynamicsCYANA
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number80
Conformers Submitted Total Number20
Representative Model1 (target function)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
3processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4chemical shift assignmentAnalysisCCPN
2structure calculationUNIOHerrmann, T. et al.
1refinementCYANAGuntert, Mumenthaler and Wuthrich