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Crystal structure of Human galectin-1 in complex with Lactulose
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.2 M ammonium sulfate, 25% w/v PEG4000, 0.1 M sodium acetate trihydrate, pH 6.2
Crystal Properties Matthews coefficient Solvent content 2.41 48.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.23 α = 90 b = 58.32 β = 90 c = 111.5 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2016-10-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.9537 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 34.73 99.7 20.9 13.8 26735
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.8 34.73 25370 1365 99.51 0.21042 0.20917 0.2165 0.23343 0.2391 RANDOM 19.67
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.187 r_dihedral_angle_4_deg 18.246 r_dihedral_angle_3_deg 14.472 r_dihedral_angle_1_deg 6.82 r_long_range_B_refined 4.638 r_long_range_B_other 4.599 r_scangle_other 2.513 r_mcangle_it 2.371 r_mcangle_other 2.371 r_scbond_it 1.802
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.187 r_dihedral_angle_4_deg 18.246 r_dihedral_angle_3_deg 14.472 r_dihedral_angle_1_deg 6.82 r_long_range_B_refined 4.638 r_long_range_B_other 4.599 r_scangle_other 2.513 r_mcangle_it 2.371 r_mcangle_other 2.371 r_scbond_it 1.802 r_scbond_other 1.802 r_angle_refined_deg 1.477 r_mcbond_it 1.351 r_mcbond_other 1.349 r_angle_other_deg 0.993 r_chiral_restr 0.082 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2050 Nucleic Acid Atoms Solvent Atoms 115 Heterogen Atoms 94
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing