6B2J

E45A mutant of HIV-1 capsid protein (other crystal form)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP291PEG3350, NaI, MIB, Glycerol
Crystal Properties
Matthew coefficientSolvent content
2.7955.89

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 92.493α = 90
b = 92.493β = 90
c = 57.748γ = 120
Symmetry
Space GroupP 6

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCD2016-04-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 23-ID-B1.033200APS23-ID-B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.214799.90.0840.0890.0270.99917.611.314252
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.212.2899.21.321.3850.4170.62810.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.21471355669399.950.20330.20230.2233RANDOM63.319
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.58-0.29-0.581.88
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_bonded53.232
r_sphericity_free51.767
r_dihedral_angle_2_deg32.923
r_dihedral_angle_4_deg18.231
r_dihedral_angle_3_deg11.687
r_dihedral_angle_1_deg5.282
r_angle_refined_deg1.062
r_angle_other_deg0.851
r_chiral_restr0.054
r_bond_refined_d0.007
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_bonded53.232
r_sphericity_free51.767
r_dihedral_angle_2_deg32.923
r_dihedral_angle_4_deg18.231
r_dihedral_angle_3_deg11.687
r_dihedral_angle_1_deg5.282
r_angle_refined_deg1.062
r_angle_other_deg0.851
r_chiral_restr0.054
r_bond_refined_d0.007
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1721
Nucleic Acid Atoms
Solvent Atoms98
Heterogen Atoms14

Software

Software
Software NamePurpose
Aimlessdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
Aimlessdata reduction
CRANK2phasing