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Crystal structure of fluoride channel Fluc Ec2 T114S Mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5KBN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 295 31% PEG 600, 100 mM ADA, 10 mM HEPES, 100 mM NaF, 50 mM LiNO3
Crystal Properties Matthews coefficient Solvent content 5.7 78.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.09 α = 90 b = 87.09 β = 90 c = 143.87 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2016-02-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 1.00003 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.01 37.84 99.8 0.099 0.106 0.036 0.999 14.1 8.7 21243
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.01 3.19 99.6 1.475 1.566 0.523 0.707 8.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5KBN 3.01 37.84 20151 1062 99.74 0.2385 0.2377 0.2435 0.254 0.2561 RANDOM 108.664
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.75 -5.75 11.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.865 r_dihedral_angle_4_deg 13.053 r_dihedral_angle_3_deg 12.604 r_dihedral_angle_1_deg 5.922 r_angle_refined_deg 1.032 r_angle_other_deg 0.8 r_chiral_restr 0.054 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.865 r_dihedral_angle_4_deg 13.053 r_dihedral_angle_3_deg 12.604 r_dihedral_angle_1_deg 5.922 r_angle_refined_deg 1.032 r_angle_other_deg 0.8 r_chiral_restr 0.054 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3358 Nucleic Acid Atoms Solvent Atoms 6 Heterogen Atoms 100
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PDB_EXTRACT data extraction XDS data reduction PHASER phasing