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Structural and biochemical characterization of a non-canonical biuret hydrolase (BiuH) from the cyanuric acid catabolism pathway of Rhizobium leguminasorum bv. viciae 3841
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.1 281 Protein at 4 mg/mL was set up in 200 nL plus 200 nL drops with reservoir: 100 mM bis-tris chloride at pH 6.1, 20.7% (w/v) PEG 4000, 89 mM lithium sulfate at 8C
Crystal Properties Matthews coefficient Solvent content 1.96 37.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 135.688 α = 90 b = 100.957 β = 91.84 c = 65.605 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2016-11-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.97919 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.46 47.9 99.7 0.066 0.991 11.4 19.8 32094
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.46 2.56 98 0.307 0.817 2.7 7.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.46 44.99 30444 1647 99.74 0.22789 0.22525 0.2357 0.27603 0.2831 RANDOM 17.304
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.78 0.02 -0.55 -1.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.568 r_dihedral_angle_4_deg 19.013 r_dihedral_angle_3_deg 15.873 r_dihedral_angle_1_deg 5.082 r_long_range_B_refined 3.621 r_long_range_B_other 3.57 r_angle_refined_deg 1.634 r_mcangle_it 1.474 r_mcangle_other 1.474 r_scangle_other 1.423
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.568 r_dihedral_angle_4_deg 19.013 r_dihedral_angle_3_deg 15.873 r_dihedral_angle_1_deg 5.082 r_long_range_B_refined 3.621 r_long_range_B_other 3.57 r_angle_refined_deg 1.634 r_mcangle_it 1.474 r_mcangle_other 1.474 r_scangle_other 1.423 r_angle_other_deg 1.077 r_mcbond_it 0.862 r_mcbond_other 0.86 r_scbond_it 0.851 r_scbond_other 0.851 r_chiral_restr 0.098 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7038 Nucleic Acid Atoms Solvent Atoms 413 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling CRANK2 phasing