X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP29820% w/v PEG 3000, 0.1 M Bis-Tris-HCl, pH 6.5, 0.2 M calcium acetate, 1 % v/v glycerol
Crystal Properties
Matthews coefficientSolvent content
1.935.22

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 38.83α = 90
b = 102.594β = 90
c = 112.65γ = 90
Symmetry
Space GroupP 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6MRh coated flat bent M0, toroidal focusing post-monochromator M12017-02-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL9-20.979460SSRLBL9-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.66102.5999.30.120.08110.75.613470
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.662.7996.31.1790.8411.35.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.66102.591279266199.150.24480.242090.29682RANDOM53.141
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.86-2.450.58
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.41
r_dihedral_angle_3_deg13.459
r_dihedral_angle_4_deg11.929
r_dihedral_angle_1_deg6.283
r_long_range_B_refined3.132
r_long_range_B_other3.132
r_mcangle_it1.64
r_mcangle_other1.64
r_scangle_other1.141
r_angle_refined_deg1.14
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.41
r_dihedral_angle_3_deg13.459
r_dihedral_angle_4_deg11.929
r_dihedral_angle_1_deg6.283
r_long_range_B_refined3.132
r_long_range_B_other3.132
r_mcangle_it1.64
r_mcangle_other1.64
r_scangle_other1.141
r_angle_refined_deg1.14
r_angle_other_deg0.9
r_mcbond_it0.893
r_mcbond_other0.893
r_scbond_it0.606
r_scbond_other0.606
r_chiral_restr0.063
r_bond_refined_d0.007
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3367
Nucleic Acid Atoms
Solvent Atoms8
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
MOLREPphasing