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Crystal Structure of DAD2 in complex with tolfenamic acid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4DNP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 291 Tris/Acetate 0.1M, MgCl2 0.2M, PEG 8000 24%
Crystal Properties Matthews coefficient Solvent content 2.27 45.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.86 α = 95.76 b = 55.83 β = 95.13 c = 69.23 γ = 108.46
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2015-02-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.9537 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 34.67 91.2 0.086 0.1 0.051 0.998 10.9 3.9 56704 16.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.68 89.8 0.868 1.01 0.515 0.648 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4DNP 1.65 30.42 53834 2868 91.23 0.1697 0.1681 0.18 0.2002 0.2127 RANDOM 21.885
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.45 -0.33 0.15 -0.97 -0.18 0.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.976 r_dihedral_angle_4_deg 17.912 r_dihedral_angle_3_deg 11.763 r_dihedral_angle_1_deg 5.812 r_angle_refined_deg 1.451 r_angle_other_deg 1.212 r_chiral_restr 0.087 r_bond_refined_d 0.011 r_gen_planes_other 0.009 r_gen_planes_refined 0.008
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.976 r_dihedral_angle_4_deg 17.912 r_dihedral_angle_3_deg 11.763 r_dihedral_angle_1_deg 5.812 r_angle_refined_deg 1.451 r_angle_other_deg 1.212 r_chiral_restr 0.087 r_bond_refined_d 0.011 r_gen_planes_other 0.009 r_gen_planes_refined 0.008 r_bond_other_d 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4154 Nucleic Acid Atoms Solvent Atoms 485 Heterogen Atoms 36
Software Software Software Name Purpose iMOSFLM data processing Aimless data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction