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Ternary complex of Human ROR gamma Ligand Binding Domain With Compound T.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5X8X
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 299 0.1M Hepes pH6.9, 12% PEG6000
Crystal Properties Matthews coefficient Solvent content 2.21 44.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.926 α = 90 b = 73.277 β = 89.99 c = 100.204 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2013-08-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.9787 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.55 77.93 96.2 0.064 8.5 3.8 35566
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.55 2.62 79.8 0.562 2.4 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5X8X 2.55 77.93 34576 1876 98.3 0.21883 0.21744 0.2252 0.24283 0.2486 RANDOM 65.332
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -42 2.71 69.05 -27.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.033 r_dihedral_angle_4_deg 15.776 r_long_range_B_refined 14.792 r_dihedral_angle_3_deg 14.204 r_mcangle_it 10.506 r_scbond_it 8.048 r_mcbond_it 7.362 r_dihedral_angle_1_deg 3.903 r_angle_refined_deg 1.872 r_chiral_restr 0.109
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.033 r_dihedral_angle_4_deg 15.776 r_long_range_B_refined 14.792 r_dihedral_angle_3_deg 14.204 r_mcangle_it 10.506 r_scbond_it 8.048 r_mcbond_it 7.362 r_dihedral_angle_1_deg 3.903 r_angle_refined_deg 1.872 r_chiral_restr 0.109 r_bond_refined_d 0.019 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7843 Nucleic Acid Atoms Solvent Atoms 91 Heterogen Atoms 132
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing