☰ Navigation Tabs
Solution Structure of the DNA complex of the C-terminal Domain of Rok
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D 1H-13C NOESY 0.5 mM [U-99% 13C; U-99% 15N] Rok, 2.5 mM 1H_12C_14N Seq1 90% H2O/10% D2O 50 mM NaCl mM 6.0 ambient bar 298 Bruker AVANCE 950 2 3D 1H-15N NOESY 0.5 mM [U-99% 13C; U-99% 15N] Rok, 2.5 mM 1H_12C_14N Seq1 90% H2O/10% D2O 50 mM NaCl mM 6.0 ambient bar 298 Bruker AVANCE 950 3 3D F1-15N/13C filtered, F2-13C edited NOESY 0.5 mM [U-99% 13C; U-99% 15N] Rok, 2.5 mM 1H_12C_14N Seq1 90% H2O/10% D2O 50 mM NaCl mM 6.0 ambient bar 308 Bruker AVANCE 950 4 2D F1, F2-15N/13C-filtered 1H-1H NOESY 0.5 mM [U-99% 13C; U-99% 15N] Rok, 2.5 mM 1H_12C_14N Seq1 90% H2O/10% D2O 50 mM NaCl mM 6.0 ambient bar 308 Bruker AVANCE 950
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 500 2 Bruker AVANCE 950
NMR Refinement Method Details Software simulated annealing Amber
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 refinement Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman 2 structure calculation CYANA Guntert, Mumenthaler and Wuthrich 3 chemical shift assignment SANE Duggan, Legge, Dyson & Wright 4 peak picking NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax