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Tyrosinase from Burkholderia thailandensis (BtTYR) at low pH condition
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5ZRE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.2 293 22% (v/v) reagent alcohol, 100 mM sodium citrate dibasic, pH 4.2
Crystal Properties Matthews coefficient Solvent content 3.12 60.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 142.914 α = 90 b = 142.914 β = 90 c = 256.756 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2017-07-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.97934 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 123.8 97.8 0.07 39.95 8.1 131667
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.34 0.306
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5ZRE 2.3 28.88 124964 6679 97.78 0.1819 0.1798 0.1866 0.2211 0.2223 RANDOM 47.944
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.91 -0.45 -0.91 2.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.673 r_dihedral_angle_4_deg 17.643 r_dihedral_angle_3_deg 17.372 r_dihedral_angle_1_deg 7.474 r_angle_refined_deg 1.596 r_angle_other_deg 0.539 r_chiral_restr 0.071 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.673 r_dihedral_angle_4_deg 17.643 r_dihedral_angle_3_deg 17.372 r_dihedral_angle_1_deg 7.474 r_angle_refined_deg 1.596 r_angle_other_deg 0.539 r_chiral_restr 0.071 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 16544 Nucleic Acid Atoms Solvent Atoms 517 Heterogen Atoms 148
Software Software Software Name Purpose HKL-2000 data reduction REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data scaling MOLREP phasing