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Crystal structure of DFA-IIIase from Arthrobacter chlorophenolicus A6 without its lid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 287 10% PEG 3350, 0.1M Sodium malonate (pH 4.2)
Crystal Properties Matthews coefficient Solvent content 6.12 79.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 187.463 α = 90 b = 187.463 β = 90 c = 187.463 γ = 90
Symmetry Space Group I 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2016-11-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U1 0.97914 SSRF BL17U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 100 12.4 7.2 63519
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.18
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.1 50 60206 3287 99.97 0.14633 0.14532 0.16482 0.1889 RANDOM 33.292
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.673 r_sphericity_free 22.319 r_dihedral_angle_4_deg 13.519 r_dihedral_angle_3_deg 13.517 r_sphericity_bonded 7.819 r_dihedral_angle_1_deg 7.216 r_long_range_B_refined 3.674 r_long_range_B_other 3.606 r_scangle_other 3.277 r_mcangle_it 2.908
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.673 r_sphericity_free 22.319 r_dihedral_angle_4_deg 13.519 r_dihedral_angle_3_deg 13.517 r_sphericity_bonded 7.819 r_dihedral_angle_1_deg 7.216 r_long_range_B_refined 3.674 r_long_range_B_other 3.606 r_scangle_other 3.277 r_mcangle_it 2.908 r_mcangle_other 2.907 r_scbond_it 2.687 r_scbond_other 2.687 r_mcbond_it 2.403 r_mcbond_other 2.396 r_rigid_bond_restr 1.937 r_angle_refined_deg 1.453 r_angle_other_deg 0.978 r_chiral_restr 0.103 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3115 Nucleic Acid Atoms Solvent Atoms 167 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing