A ubiquitin-like protein from the hyperthermophilic archaea Caldiarchaeum subterraneum
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 0.5 mM [U-99% 13C; U-99% 15N] ubiquitin-like protein | 90% H2O/10% D2O | 120 mM | 6.7 | 1 atm | 293 | Bruker DMX 600 |
| 2 | 3D CBCA(CO)NH | 0.5 mM [U-99% 13C; U-99% 15N] ubiquitin-like protein | 90% H2O/10% D2O | 120 mM | 6.7 | 1 atm | 293 | Bruker DMX 600 |
| 3 | 3D HNCACB | 0.5 mM [U-99% 13C; U-99% 15N] ubiquitin-like protein | 90% H2O/10% D2O | 120 mM | 6.7 | 1 atm | 293 | Bruker DMX 600 |
| 4 | 3D C(CO)NH | 0.5 mM [U-99% 13C; U-99% 15N] ubiquitin-like protein | 90% H2O/10% D2O | 120 mM | 6.7 | 1 atm | 293 | Bruker DMX 600 |
| 5 | 3D 1H-15N NOESY | 0.5 mM [U-99% 13C; U-99% 15N] ubiquitin-like protein | 90% H2O/10% D2O | 120 mM | 6.7 | 1 atm | 293 | Bruker DMX 600 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | DMX | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | ||
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 50 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | Amber | 14 | CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, DUKE, LUO, ... AND KOLLMAN |
| 2 | structure solution | CYANA | 3.0 | |
| 3 | structure solution | Sparky | ||
| 4 | structure solution | NMRDraw | ||














