5ZEW
A ubiquitin-like protein from the hyperthermophilic archaea Caldiarchaeum subterraneum
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.5 mM [U-99% 13C; U-99% 15N] ubiquitin-like protein | 90% H2O/10% D2O | 120 mM | 6.7 | 1 atm | 293 | Bruker DMX 600 |
2 | 3D CBCA(CO)NH | 0.5 mM [U-99% 13C; U-99% 15N] ubiquitin-like protein | 90% H2O/10% D2O | 120 mM | 6.7 | 1 atm | 293 | Bruker DMX 600 |
3 | 3D HNCACB | 0.5 mM [U-99% 13C; U-99% 15N] ubiquitin-like protein | 90% H2O/10% D2O | 120 mM | 6.7 | 1 atm | 293 | Bruker DMX 600 |
4 | 3D C(CO)NH | 0.5 mM [U-99% 13C; U-99% 15N] ubiquitin-like protein | 90% H2O/10% D2O | 120 mM | 6.7 | 1 atm | 293 | Bruker DMX 600 |
5 | 3D 1H-15N NOESY | 0.5 mM [U-99% 13C; U-99% 15N] ubiquitin-like protein | 90% H2O/10% D2O | 120 mM | 6.7 | 1 atm | 293 | Bruker DMX 600 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DMX | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | Amber | 14 | CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, DUKE, LUO, ... AND KOLLMAN |
2 | structure solution | CYANA | 3.0 | |
3 | structure solution | Sparky | ||
4 | structure solution | NMRDraw |