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Structural basis for specific inhibition of highly sensitive ShHTL7 receptor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5CBK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 1 M Lithium Sulfate, 0.1 M HEPES pH 7.5
Crystal Properties Matthews coefficient Solvent content 3.24 62.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.59 α = 90 b = 92.59 β = 90 c = 80.26 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-01-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.9789 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 80.19 99.98 24.56 9.9 115730
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.24
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5CBK 1.2 80.19 115730 6091 99.82 0.12965 0.12891 0.1434 0.161 RANDOM 16.227
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.17 -0.08 -0.17 0.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.173 r_sphericity_free 25.909 r_dihedral_angle_4_deg 18.183 r_dihedral_angle_3_deg 12.99 r_sphericity_bonded 10.768 r_dihedral_angle_1_deg 6.188 r_long_range_B_refined 3.09 r_long_range_B_other 2.709 r_scangle_other 2.565 r_rigid_bond_restr 2.011
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.173 r_sphericity_free 25.909 r_dihedral_angle_4_deg 18.183 r_dihedral_angle_3_deg 12.99 r_sphericity_bonded 10.768 r_dihedral_angle_1_deg 6.188 r_long_range_B_refined 3.09 r_long_range_B_other 2.709 r_scangle_other 2.565 r_rigid_bond_restr 2.011 r_scbond_it 1.961 r_scbond_other 1.961 r_angle_refined_deg 1.685 r_mcangle_other 1.442 r_mcangle_it 1.441 r_angle_other_deg 1.04 r_mcbond_it 1.016 r_mcbond_other 1.007 r_chiral_restr 0.107 r_bond_refined_d 0.013 r_gen_planes_refined 0.009 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2088 Nucleic Acid Atoms Solvent Atoms 289 Heterogen Atoms 47
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing