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Structural basis for specific inhibition of highly sensitive ShHTL7 receptor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5CBK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 0.1 M MES monohydrate pH 6.5, 1.6 M Magnesium sulfate heptahydrate
Crystal Properties Matthews coefficient Solvent content 3.19 61.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.59 α = 90 b = 92.59 β = 90 c = 80.36 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2017-01-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.987 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 40.09 99.61 0.999 23.12 9.1 85478
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.398 0.575
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5CBK 1.35 40.09 81206 4274 99.7 0.12913 0.12835 0.1335 0.14379 0.1483 RANDOM 20.335
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.25 -0.13 -0.25 0.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.777 r_sphericity_free 31.612 r_dihedral_angle_4_deg 20.065 r_dihedral_angle_3_deg 11.16 r_sphericity_bonded 9.948 r_dihedral_angle_1_deg 5.779 r_long_range_B_refined 3.965 r_long_range_B_other 2.763 r_scangle_other 2.301 r_rigid_bond_restr 1.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.777 r_sphericity_free 31.612 r_dihedral_angle_4_deg 20.065 r_dihedral_angle_3_deg 11.16 r_sphericity_bonded 9.948 r_dihedral_angle_1_deg 5.779 r_long_range_B_refined 3.965 r_long_range_B_other 2.763 r_scangle_other 2.301 r_rigid_bond_restr 1.77 r_scbond_it 1.735 r_scbond_other 1.722 r_mcangle_other 1.484 r_mcangle_it 1.475 r_angle_refined_deg 1.398 r_mcbond_it 1.085 r_mcbond_other 1.061 r_angle_other_deg 0.847 r_chiral_restr 0.088 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2088 Nucleic Acid Atoms Solvent Atoms 269 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PROTEUM PLUS data reduction SCALA data scaling MOLREP phasing