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Structural basis for specific inhibition of highly sensitive ShHTL7 receptor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5CBK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 1M Lithium Sulfate, 0.1M HEPES pH 7.5
Crystal Properties Matthews coefficient Solvent content 3.24 62.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.57 α = 90 b = 92.57 β = 90 c = 80.19 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2016-07-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 2 0.97857 SOLEIL PROXIMA 2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.42 80.17 99.72 30.4 14.4 69210
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.42 1.47
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5CBK 1.42 80.17 69210 3642 99.71 0.10169 0.10072 0.1202 0.12006 0.1362 RANDOM 16.82
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.982 r_sphericity_free 25.519 r_dihedral_angle_4_deg 19.438 r_dihedral_angle_3_deg 11.757 r_sphericity_bonded 8.495 r_dihedral_angle_1_deg 5.81 r_long_range_B_refined 3.218 r_rigid_bond_restr 2.939 r_long_range_B_other 2.77 r_scangle_other 2.767
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.982 r_sphericity_free 25.519 r_dihedral_angle_4_deg 19.438 r_dihedral_angle_3_deg 11.757 r_sphericity_bonded 8.495 r_dihedral_angle_1_deg 5.81 r_long_range_B_refined 3.218 r_rigid_bond_restr 2.939 r_long_range_B_other 2.77 r_scangle_other 2.767 r_scbond_it 2.23 r_scbond_other 2.23 r_angle_refined_deg 1.753 r_mcangle_it 1.375 r_mcangle_other 1.375 r_angle_other_deg 1.057 r_mcbond_it 1.027 r_mcbond_other 1.026 r_chiral_restr 0.11 r_bond_refined_d 0.016 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2090 Nucleic Acid Atoms Solvent Atoms 295 Heterogen Atoms 47
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing