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Crystal structure of ConA-R3M
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.2 300 20% polyethylene glycol 6000, 20 mM HEPES, 100 mM NaCl, 5 mM CaCl2, 5 mM MnCl2 pH 7.2
Crystal Properties Matthews coefficient Solvent content 2.06 40.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.742 α = 90 b = 61.945 β = 90 c = 115.96 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2015-10-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U1 0.9716 SSRF BL17U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 59 99.7 2.2 12.4 84005
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.42
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.4 58.74 72652 3721 90.84 0.19492 0.1926 0.2115 0.24149 0.2533 RANDOM 18.086
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.24 -0.05 0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.244 r_dihedral_angle_3_deg 13.967 r_dihedral_angle_4_deg 12.757 r_dihedral_angle_1_deg 9.223 r_long_range_B_refined 6.316 r_long_range_B_other 6.315 r_scangle_other 3.967 r_mcangle_it 3.386 r_mcangle_other 3.386 r_angle_refined_deg 2.647
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.244 r_dihedral_angle_3_deg 13.967 r_dihedral_angle_4_deg 12.757 r_dihedral_angle_1_deg 9.223 r_long_range_B_refined 6.316 r_long_range_B_other 6.315 r_scangle_other 3.967 r_mcangle_it 3.386 r_mcangle_other 3.386 r_angle_refined_deg 2.647 r_scbond_it 2.615 r_scbond_other 2.614 r_mcbond_it 2.209 r_mcbond_other 2.206 r_angle_other_deg 1.26 r_chiral_restr 0.303 r_bond_refined_d 0.025 r_gen_planes_refined 0.013 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3399 Nucleic Acid Atoms Solvent Atoms 290 Heterogen Atoms 123
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing